Combining evidence using p-values: application to sequence homology searches

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چکیده

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Combining evidence using p-values: application to sequence homology searches

MOTIVATION To illustrate an intuitive and statistically valid method for combining independent sources of evidence that yields a p-value for the complete evidence, and to apply it to the problem of detecting simultaneous matches to multiple patterns in sequence homology searches. RESULTS In sequence analysis, two or more (approximately) independent measures of the membership of a sequence (or...

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Combining Evidence Using P-values: Application to Sequence Homology Searches Introduction

Motivation: To illustrate an intuitive and statistically valid method for combining independent sources of evidence that yields a p-value for the complete evidence, and to apply it to the problem of detecting simultaneous matches to multiple patterns in sequence homology searches. Results: In sequence analysis, two or more (approximately) independent measures of the membership of a sequence (or...

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Faster sequence homology searches by clustering subsequences

MOTIVATION Sequence homology searches are used in various fields. New sequencing technologies produce huge amounts of sequence data, which continuously increase the size of sequence databases. As a result, homology searches require large amounts of computational time, especially for metagenomic analysis. RESULTS We developed a fast homology search method based on database subsequence clusteri...

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GPU-Acceleration of Sequence Homology Searches with Database Subsequence Clustering

Sequence homology searches are used in various fields and require large amounts of computation time, especially for metagenomic analysis, owing to the large number of queries and the database size. To accelerate computing analyses, graphics processing units (GPUs) are widely used as a low-cost, high-performance computing platform. Therefore, we mapped the time-consuming steps involved in GHOSTZ...

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Combining Statistical Tests by Multiplying P-values

A general discussion on combining statistical hypothesis tests is followed by an application involving point source detection in skymaps. The traditional literature on combining statistical tests has concentrated on a regime in which p-values as large as 0.05 are still of interest, and in which it is dangerous to treat tests as truly independent. But for point source detection, very small p-val...

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ژورنال

عنوان ژورنال: Bioinformatics

سال: 1998

ISSN: 1367-4803,1460-2059

DOI: 10.1093/bioinformatics/14.1.48